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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
10
ATAC-seq
2
DNase-seq
Assay category
37
DNA binding
12
DNA accessibility
Target of assay
transcription factor
88
recombinant protein
62
RNA binding protein
32
histone
32
histone modification
30
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
16
November, 2017
11
November, 2019
9
February, 2021
8
October, 2019
August, 2021
2
December, 2018
1
January, 2019
1
March, 2020
1
May, 2021
Available data
225
bam
155
bigWig
102
tsv
90
fastq
49
bed narrowPeak
27
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
15
tagAlign
3
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
Organism
49
Homo sapiens
Biosample type
845
tissue
282
primary cell
75
in vitro differentiated cells
49
cell line
2
stem cell
Organ
20
pancreas
17
liver
14
epithelium
8
artery
8
blood vessel
8
heart
8
vasculature
3
blood
3
bodily fluid
1
kidney
Project
47
AMP
2
T1D
Genome assembly (visualization)
49
GRCh38
49
hg19
Lab
49
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
9
inconsistent control read length
assay_title!
whole genome sequencing assay
month_released!
August, 2021
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
16
1
EndoC_BH1
12
1
smooth muscle cell of the coronary artery
8
Panc1
6
1
GM12878
3
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