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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
17
total RNA-seq
5
STARR-seq
2
Capture-C
1
Hi-C
whole genome sequencing assay
Assay category
18
DNA binding
17
Transcription
1
3D chromatin structure
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
315
November, 2017
96
February, 2021
61
November, 2018
43
August, 2021
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
May, 2020
1
October, 2022
Available data
22
bigWig
17
tsv
14
bed narrowPeak
8
bam
1
bedpe bed3+
1
hic
Organism
43
Homo sapiens
Biosample type
229
tissue
43
cell line
42
in vitro differentiated cells
4
primary cell
Organ
30
liver
8
embryo
2
epithelium
2
kidney
2
pancreas
Project
43
AMP
Genome assembly (visualization)
23
hg19
8
GRCh38
Lab
33
Bing Ren, UCSD
10
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
whole genome sequencing assay
month_released!
May, 2020
October, 2019
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
total RNA-seq
STARR-seq
Capture-C
Hi-C
cell line
HepG2
18
9
2
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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