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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ChIP-seq
Assay category
116
DNA binding
Target of assay
108
histone
108
histone modification
58
broad histone mark
50
narrow histone mark
4
control
4
transcription factor
Date released
90
May, 2021
26
August, 2017
August, 2021
Available data
859
bam
847
bigWig
550
fastq
399
bed narrowPeak
394
tsv
153
zippedFastqFolder
126
bigBed narrowPeak
116
tagAlign
57
bed bed3+
50
bed broadPeak
50
bigBed broadPeak
11
bedpe bed3+
10
bed bedMethyl
10
bigBed bedMethyl
10
hic
7
bed bedgraph
6
bed bed3
4
hdf5
3
cool
3
txt
2
csv
2
ibed
1
tar
Organism
116
Homo sapiens
Biosample type
238
tissue
96
primary cell
20
cell line
20
in vitro differentiated cells
Organ
14
connective tissue
3
epithelium
3
pancreas
Project
84
T1D
32
AMP
Genome assembly (visualization)
101
hg19
100
GRCh38
Lab
84
Kyle Gaulton, UCSD
32
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
whole genome sequencing assay
month_released!
August, 2021
BIOSAMPLE
ASSAY
116 results
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ChIP-seq
primary cell
monocyte
84
skeletal muscle myoblast
12
in vitro differentiated cells
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
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