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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
Assay category
161
DNA binding
Target of assay
332
histone
332
histone modification
170
broad histone mark
161
narrow histone mark
64
control
59
transcription factor
21
RNA binding protein
4
chromatin remodeller
Date released
63
May, 2021
38
August, 2017
15
September, 2018
13
December, 2017
11
June, 2019
August, 2021
9
October, 2019
8
February, 2018
3
November, 2017
1
May, 2019
Available data
143
bigWig
135
bam
135
bed narrowPeak
73
fastq
50
tagAlign
31
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
4
bed bed3+
Organism
161
Homo sapiens
Biosample type
324
tissue
113
primary cell
48
in vitro differentiated cells
17
cell line
1
stem cell
Organ
41
epithelium
32
pancreas
20
connective tissue
8
embryo
8
vasculature
7
blood vessel
6
vein
5
kidney
5
liver
4
musculature of body
3
brain
2
heart
1
eye
Project
121
AMP
40
T1D
Genome assembly (visualization)
143
hg19
133
GRCh38
Lab
101
AMP-T2D consortium
60
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
Audit category:
24
missing controlled_by
Audit category:
7
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
whole genome sequencing assay
month_released!
August, 2021
BIOSAMPLE
ASSAY
161 results
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ChIP-seq
primary cell
monocyte
41
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
+ See 16 more…
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
pancreatic endoderm
6
hepatocyte
5
Hepatic endoderm
2
+ See 6 more…
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