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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
9
ATAC-seq
1
DNase-seq
Assay category
97
DNA binding
10
DNA accessibility
Target of assay
65
histone
65
histone modification
33
narrow histone mark
32
transcription factor
31
broad histone mark
6
RNA binding protein
3
chromatin remodeller
Date released
43
August, 2017
34
December, 2017
August, 2021
16
February, 2018
5
May, 2021
5
November, 2019
2
February, 2023
2
October, 2019
Available data
254
bam
237
bigWig
141
fastq
124
tsv
107
bed narrowPeak
23
bed bed3+
20
tagAlign
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
107
Homo sapiens
Biosample type
920
tissue
390
cell line
292
primary cell
107
in vitro differentiated cells
2
stem cell
Organ
43
connective tissue
18
epithelium
14
embryo
14
liver
2
pancreas
Project
107
AMP
Genome assembly (visualization)
107
hg19
105
GRCh38
Lab
105
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
Audit category:
17
inconsistent control read length
assay_title!
whole genome sequencing assay
files.file_type!
bed bedMethyl
month_released!
August, 2021
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
42
1
hepatocyte
14
pancreatic endoderm
12
definitive endodermal cell
6
primitive gut cell
6
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