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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
DNase-seq
34
ChIP-seq
2
ATAC-seq
Assay category
172
DNA accessibility
34
DNA binding
Target of assay
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
Date released
162
June, 2019
25
August, 2017
8
November, 2018
6
November, 2017
4
October, 2017
October, 2019
1
March, 2019
Available data
1281
bam
1190
bigWig
820
bed narrowPeak
669
tsv
505
bigBed narrowPeak
334
fastq
206
bed broadPeak
195
bed bed3+
181
tagAlign
170
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
200
Homo sapiens
Biosample type
206
tissue
58
cell line
45
primary cell
1
in vitro differentiated cells
Organ
68
kidney
45
musculature of body
36
brain
32
limb
27
heart
20
pancreas
18
ureter
adipose tissue
3
blood vessel
3
connective tissue
3
eye
3
liver
3
vasculature
2
artery
1
spleen
Project
206
AMP
Genome assembly (visualization)
189
hg19
185
GRCh38
Lab
204
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
assay_title!
whole genome sequencing assay
month_released!
October, 2019
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
206 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
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