Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
698
ChIP-seq
570
total RNA-seq
244
ATAC-seq
174
single cell RNA-seq
151
DNase-seq
28
snATAC-seq
27
WGBS
23
pCHi-C
15
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
RNA microarray
Assay category
756
Transcription
698
DNA binding
426
DNA accessibility
37
DNA methylation
15
3D chromatin structure
Target of assay
444
histone modification
443
histone
233
broad histone mark
210
narrow histone mark
162
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
284
August, 2017
229
August, 2021
193
May, 2020
156
October, 2019
138
June, 2019
120
July, 2018
94
February, 2023
87
May, 2019
80
April, 2019
74
October, 2018
66
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
38
March, 2020
24
November, 2018
19
April, 2020
15
May, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1228
bam
1126
bigWig
784
bed narrowPeak
601
tsv
445
bigBed narrowPeak
364
fastq
178
bed bed3+
176
bed broadPeak
149
bigBed broadPeak
120
tagAlign
68
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
4
bed bed3
Organism
1953
Homo sapiens
Biosample type
1962
tissue
1019
primary cell
565
cell line
368
in vitro differentiated cells
10
stem cell
Organ
500
pancreas
360
liver
313
heart
291
kidney
brain
133
blood vessel
133
vasculature
116
limb
103
connective tissue
102
adipose tissue
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1865
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1202
GRCh38
1157
hg19
Lab
1615
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
audit script error
4
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
whole genome sequencing assay
month_released!
February, 2021
March, 2019
organ_slims!
brain
BIOSAMPLE
ASSAY
1962 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
RNA microarray
tissue
islet of Langerhans
71
292
63
6
1
7
4
2
1
4
1
liver
145
167
20
2
3
1
1
1
1
kidney
27
49
75
59
13
6
1
1
1
heart left ventricle
35
3
2
18
3
4
1
1
1
left cardiac atrium
40
18
1
+ See 81 more…
See all biosamples
Download