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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
ChIP-seq
4
DNase-seq
4
pCHi-C
Assay category
32
DNA accessibility
19
Transcription
4
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
21
October, 2019
6
June, 2019
1
February, 2020
Available data
32
bed narrowPeak
6
bam
5
bigBed narrowPeak
5
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
bed bedMethyl
1
bigBed bedMethyl
Organism
59
Homo sapiens
Biosample type
56
tissue
3
primary cell
Organ
931
pancreas
729
liver
671
connective tissue
510
epithelium
484
adipose tissue
374
heart
347
kidney
281
brain
229
vasculature
225
blood vessel
159
bone element
140
artery
limb
92
musculature of body
59
blood
59
bodily fluid
59
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
32
hg19
5
GRCh38
Lab
59
AMP-T2D consortium
assay_title!
whole genome sequencing assay
files.file_type!
bed bedMethyl
organ_slims!
limb
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
59 results
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ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans
1
14
2
4
retina
15
3
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
2
1
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