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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
10
total RNA-seq
5
STARR-seq
1
ATAC-seq
1
Hi-C
whole genome sequencing assay
Assay category
15
DNA binding
10
Transcription
1
3D chromatin structure
1
DNA accessibility
Target of assay
11
transcription factor
4
control
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
31
August, 2021
1
March, 2019
Available data
11
bed narrowPeak
11
bigWig
10
tsv
2
bedpe bed3+
hic
1
bedpe
Organism
32
Homo sapiens
Biosample type
29
cell line
3
tissue
Organ
26
liver
3
pancreas
2
kidney
Project
32
AMP
Genome assembly (visualization)
12
hg19
1
GRCh38
Lab
3052
AMP-T2D consortium
321
Klaus Kaestner, Upenn
209
Kyle Gaulton, UCSD
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
32
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
whole genome sequencing assay
files.file_type!
hic
target.investigated_as!
histone
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
total RNA-seq
STARR-seq
ATAC-seq
Hi-C
cell line
HepG2
15
9
2
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
1
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