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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
6
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
1
ATAC-seq
1
FAIRE-seq
Assay category
34
DNA accessibility
12
Transcription
6
DNA binding
3
3D chromatin structure
Target of assay
histone
160
histone modification
105
narrow histone mark
55
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
16
July, 2019
6
November, 2017
2
November, 2018
October, 2017
1
October, 2019
Available data
74
bam
55
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
26
tsv
17
tagAlign
8
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
55
Homo sapiens
Biosample type
38
tissue
17
primary cell
Organ
540
liver
534
connective tissue
476
pancreas
422
adipose tissue
211
epithelium
127
heart
101
kidney
87
vasculature
83
blood vessel
65
artery
58
bone element
55
brain
54
blood
54
bodily fluid
43
limb
41
musculature of body
18
embryo
18
ureter
9
spleen
7
nerve
5
eye
3
vein
1
pericardium
Project
55
AMP
Genome assembly (visualization)
48
GRCh38
44
hg19
Lab
55
AMP-T2D consortium
assay_title!
whole genome sequencing assay
month_released!
October, 2017
target.investigated_as!
histone
BIOSAMPLE
ASSAY
55 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
14
1
frontal cortex
2
1
1
1
cerebellum (Hemisphere)
1
1
diencephalon
1
1
temporal lobe
1
1
+ See 12 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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