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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
DNase-seq
86
ChIP-seq
7
WGBS
1
FAIRE-seq
Assay category
179
DNA accessibility
86
DNA binding
7
DNA methylation
Target of assay
67
transcription factor
25
RNA binding protein
19
histone
19
histone modification
15
recombinant protein
11
narrow histone mark
8
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
207
October, 2019
192
June, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
287
bam
272
bigWig
265
bed narrowPeak
265
bigBed narrowPeak
178
bed bed3+
178
bed broadPeak
178
bigBed broadPeak
88
fastq
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
272
Homo sapiens
Biosample type
168
tissue
57
cell line
47
primary cell
Organ
80
kidney
54
liver
41
musculature of body
33
heart
32
brain
32
limb
18
epithelium
ureter
16
connective tissue
12
blood
12
bodily fluid
11
pancreas
7
vasculature
6
eye
6
spleen
5
blood vessel
2
adipose tissue
2
artery
Project
272
AMP
Genome assembly (visualization)
271
GRCh38
240
hg19
Lab
272
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
whole genome sequencing assay
organ_slims!
ureter
BIOSAMPLE
ASSAY
272 results
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Clear Filters
DNase-seq
ChIP-seq
WGBS
FAIRE-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 34 more…
cell line
HepG2
44
1
GM12878
12
primary cell
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
cardiac muscle cell
1
2
epithelial cell of proximal tubule
1
2
+ See 17 more…
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