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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
3
ChIP-seq
Assay category
60
DNA accessibility
52
Transcription
41
DNA methylation
3
DNA binding
Target of assay
3
transcription factor
1
RNA binding protein
Date released
134
May, 2022
19
September, 2020
3
November, 2017
Available data
3207
bam
3014
bigWig
1684
bed narrowPeak
1532
tsv
1352
fastq
959
bigBed narrowPeak
392
tagAlign
305
bed broadPeak
268
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
156
Homo sapiens
Biosample type
153
primary cell
3
cell line
Organ
81
epithelium
80
pancreas
3
liver
1
blood vessel
vasculature
1
vein
Project
153
HPAP
3
AMP
Genome assembly (visualization)
3
hg19
Lab
153
Klaus Kaestner, Upenn
3
AMP-T2D consortium
assay_title!
whole genome sequencing assay
month_released!
April, 2020
organ_slims!
vasculature
BIOSAMPLE
ASSAY
156 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
ChIP-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cell line
HepG2
3
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