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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
ChIP-seq
6
WGBS
1
ATAC-seq
1
DNase-seq
Assay category
140
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
69
histone
69
histone modification
40
broad histone mark
39
transcription factor
32
control
28
narrow histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
455
February, 2021
125
August, 2017
23
October, 2018
18
July, 2019
18
June, 2019
14
February, 2023
6
November, 2020
5
August, 2021
4
October, 2019
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
95
fastq
94
bam
70
bigWig
51
bed narrowPeak
22
tagAlign
11
bed bed3+
8
bigBed narrowPeak
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bigBed broadPeak
Organism
148
Homo sapiens
Biosample type
80
tissue
68
in vitro differentiated cells
Organ
241
pancreas
148
connective tissue
80
adipose tissue
54
liver
31
epithelium
26
musculature of body
Project
148
AMP
Genome assembly (visualization)
70
GRCh38
69
hg19
Lab
148
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
whole genome sequencing assay
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
148 results
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Clear Filters
ChIP-seq
WGBS
ATAC-seq
DNase-seq
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
12
1
white adipose tissue
12
omental fat pad
11
adipose tissue
2
3
in vitro differentiated cells
adipocyte
67
1
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