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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
10
total RNA-seq
5
STARR-seq
2
Hi-C
whole genome sequencing assay
Assay category
16
DNA binding
10
Transcription
2
3D chromatin structure
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
33
August, 2021
7
August, 2020
3
October, 2022
2
March, 2019
Available data
12
bed narrowPeak
12
bigWig
10
tsv
2
bedpe bed3+
1
hic
Organism
33
Homo sapiens
Biosample type
31
cell line
2
tissue
Organ
28
liver
2
kidney
2
pancreas
Project
33
AMP
Genome assembly (visualization)
13
hg19
Lab
142
AMP-T2D consortium
128
Katalin Susztak, Upenn
33
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
0
Klaus Kaestner, Upenn
Audit category:
1
inconsistent ontology term
assay_title!
whole genome sequencing assay
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
cell line
HepG2
16
9
2
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
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