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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
10
total RNA-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
whole genome sequencing assay
Assay category
58
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA accessibility
Target of assay
38
histone
38
histone modification
21
broad histone mark
17
narrow histone mark
16
transcription factor
6
RNA binding protein
4
control
Date released
40
May, 2024
35
August, 2021
2
March, 2019
Available data
54
bed narrowPeak
54
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
Organism
77
Homo sapiens
Biosample type
44
tissue
33
cell line
Organ
40
heart
30
liver
4
pancreas
2
kidney
Project
77
AMP
Genome assembly (visualization)
41
GRCh38
17
hg19
Lab
3598
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
whole genome sequencing assay
month_released!
October, 2019
BIOSAMPLE
ASSAY
77 results
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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
ATAC-seq
tissue
left cardiac atrium
40
islet of Langerhans
1
2
1
cell line
HepG2
18
9
2
1
HEK293T
2
Synthesized DNA
1
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