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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
508
ChIP-seq
192
total RNA-seq
34
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
whole genome sequencing assay
Assay category
508
DNA binding
196
Transcription
40
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
338
transcription factor
108
control
98
histone modification
97
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
307
November, 2017
194
May, 2020
53
December, 2017
53
November, 2018
40
May, 2022
35
August, 2017
32
August, 2021
11
February, 2021
10
July, 2019
8
February, 2023
5
December, 2019
5
January, 2019
October, 2019
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
656
bam
589
bigWig
440
fastq
417
bed narrowPeak
337
bigBed narrowPeak
173
tsv
68
tagAlign
55
bed broadPeak
55
bigBed broadPeak
12
bed bed3+
5
bed bed3
4
txt
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
Organism
760
Homo sapiens
Biosample type
391
cell line
349
tissue
12
primary cell
8
in vitro differentiated cells
Organ
854
pancreas
744
liver
636
connective tissue
470
adipose tissue
457
epithelium
331
heart
312
kidney
167
vasculature
161
blood vessel
159
bone element
133
brain
115
artery
76
musculature of body
69
blood
69
bodily fluid
49
limb
40
eye
33
embryo
21
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
760
AMP
Genome assembly (visualization)
603
hg19
507
GRCh38
Lab
691
AMP-T2D consortium
40
Karen Mohlke, UNC
29
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
assay_title!
whole genome sequencing assay
month_released!
October, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
760 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
cell line
HepG2
369
14
1
1
2
2
2
tissue
liver
121
166
20
2
3
1
1
1
1
1
right lobe of liver
7
3
1
2
1
2
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
primary cell
hepatocyte
3
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
8
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