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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
560
ChIP-seq
2
total RNA-seq
Assay category
560
DNA binding
2
Transcription
Target of assay
265
transcription factor
178
histone
178
histone modification
114
control
106
broad histone mark
72
narrow histone mark
66
recombinant protein
52
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
709
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
318
August, 2021
245
October, 2019
205
February, 2023
200
May, 2022
186
June, 2019
168
July, 2018
113
May, 2019
103
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
547
bam
446
bigWig
423
bed narrowPeak
421
bigBed narrowPeak
384
fastq
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
2
tsv
Organism
562
Homo sapiens
Biosample type
315
cell line
236
tissue
11
primary cell
Organ
315
liver
91
brain
57
heart
53
pancreas
23
adipose tissue
23
connective tissue
23
kidney
8
epithelium
6
vasculature
3
blood vessel
Project
562
AMP
Genome assembly (visualization)
393
hg19
391
GRCh38
Lab
562
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
assay_title!
whole genome sequencing assay
organ_slims!
limb
BIOSAMPLE
ASSAY
562 results
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Clear Filters
ChIP-seq
total RNA-seq
cell line
HepG2
315
tissue
heart left ventricle
35
body of pancreas
33
kidney
23
layer of hippocampus
22
endocrine pancreas
16
+ See 10 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
pancreatic acinar cell
2
See all biosamples
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