Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
982
total RNA-seq
907
ChIP-seq
185
ATAC-seq
178
DNase-seq
169
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
22
snATAC-seq
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
185
DNA accessibility
Date released
79
February, 2023
38
May, 2022
20
November, 2019
16
October, 2019
8
February, 2021
8
October, 2017
6
July, 2019
4
March, 2019
2
August, 2017
2
January, 2018
2
March, 2020
Available data
144
bed narrowPeak
64
bam
43
bigWig
29
fastq
5
bed bed3
3
bigBed narrowPeak
2
bed broadPeak
1
tsv
Organism
185
Homo sapiens
Biosample type
200
primary cell
185
tissue
42
in vitro differentiated cells
29
cell line
Organ
62
pancreas
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
21
liver
12
bone element
12
epithelium
12
skeleton
8
limb
6
adipose tissue
6
connective tissue
4
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
174
AMP
11
T1D
Genome assembly (visualization)
122
hg19
83
GRCh38
Lab
131
AMP-T2D consortium
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
CRISPR RNA-seq
CRISPR genome editing followed by DNA sequencing
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
185 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
tissue
islet of Langerhans
68
coronary artery
36
liver
20
retina
15
pigmented layer of retina
12
+ See 28 more…
See all biosamples
Download