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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
132
total RNA-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
DNase-seq
Assay category
30
DNA accessibility
Date released
12
August, 2021
February, 2023
5
May, 2021
5
November, 2019
4
February, 2021
4
October, 2019
Available data
19
bed narrowPeak
17
bam
9
bigWig
4
bed bedgraph
2
bigBed narrowPeak
Organism
30
Homo sapiens
Biosample type
188
primary cell
181
tissue
30
in vitro differentiated cells
29
cell line
Organ
8
connective tissue
Project
30
AMP
Genome assembly (visualization)
30
hg19
17
GRCh38
Lab
23
AMP-T2D consortium
5
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
7
inconsistent ontology term
assay_title!
CRISPR genome editing followed by DNA sequencing
DNase-seq
month_released!
February, 2023
BIOSAMPLE
ASSAY
30 results
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ATAC-seq
in vitro differentiated cells
neural progenitor cell
10
adipocyte
7
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
embryonic stem cell
5
cardiac precursors (cardiac muscle cell)
1
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