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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1215
ChIP-seq
1055
total RNA-seq
287
ATAC-seq
180
single cell RNA-seq
DNase-seq
87
RNA microarray
31
pCHi-C
28
snATAC-seq
20
Hi-C
19
WGBS
16
small RNA-seq
10
MeRIP-seq
6
RRBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
287
DNA accessibility
Date released
79
February, 2023
64
August, 2021
38
May, 2022
21
November, 2019
17
February, 2021
16
May, 2021
16
October, 2019
11
May, 2023
8
October, 2017
6
July, 2019
4
March, 2019
4
March, 2020
3
January, 2018
August, 2017
Available data
216
bed narrowPeak
72
bam
64
xls
44
bigWig
27
fastq
6
bed bed3
2
bed broadPeak
2
tsv
1
bigBed narrowPeak
Organism
287
Homo sapiens
Biosample type
258
tissue
197
primary cell
42
in vitro differentiated cells
29
cell line
Organ
81
pancreas
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
31
epithelium
28
eye
21
liver
12
bone element
12
skeleton
8
limb
5
adipose tissue
5
connective tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
276
AMP
11
T1D
Genome assembly (visualization)
166
GRCh38
133
hg19
Lab
158
AMP-T2D consortium
75
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
20
inconsistent ontology term
1
inconsistent replicate
assay_title!
DNase-seq
month_released!
August, 2017
BIOSAMPLE
ASSAY
287 results
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ATAC-seq
tissue
kidney
75
islet of Langerhans
68
coronary artery
36
liver
20
retina
15
+ See 27 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
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