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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ChIP-seq
103
ATAC-seq
53
total RNA-seq
DNase-seq
42
WGBS
14
Hi-C
11
RRBS
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
103
DNA accessibility
Date released
39
May, 2022
16
May, 2021
14
September, 2018
12
February, 2023
7
August, 2020
5
September, 2017
3
August, 2017
3
September, 2020
1
January, 2018
1
March, 2020
1
November, 2019
1
October, 2019
Available data
39
zippedFastqFolder
36
bed narrowPeak
35
bigWig
32
fastq
24
bam
22
bigBed narrowPeak
tsv
Organism
103
Homo sapiens
Biosample type
72
primary cell
18
cell line
13
tissue
Organ
150
pancreas
102
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
54
AMP
49
HPAP
Genome assembly (visualization)
38
hg19
34
GRCh38
Lab
54
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
19
inconsistent ontology term
assay_title!
DNase-seq
files.file_type!
tsv
BIOSAMPLE
ASSAY
103 results
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Clear Filters
ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
Liver fetal (hepatocyte)
1
cell line
EndoC_BH1
18
tissue
pigmented layer of retina
12
skeletal muscle tissue
1
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