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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1014
total RNA-seq
698
ChIP-seq
256
ATAC-seq
180
single cell RNA-seq
151
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
22
pCHi-C
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
256
DNA accessibility
Date released
78
February, 2023
64
August, 2021
38
May, 2022
20
November, 2019
15
October, 2019
11
May, 2023
8
February, 2021
7
October, 2017
5
July, 2019
4
March, 2019
2
August, 2017
2
January, 2018
2
March, 2020
Available data
208
bed narrowPeak
64
xls
62
bam
41
bigWig
28
fastq
4
bed bed3
3
bigBed narrowPeak
2
bed broadPeak
1
tsv
Organism
256
Homo sapiens
Biosample type
256
tissue
200
primary cell
42
in vitro differentiated cells
29
cell line
Organ
75
kidney
62
pancreas
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
21
liver
12
bone element
12
epithelium
12
skeleton
8
limb
6
adipose tissue
6
connective tissue
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
245
AMP
11
T1D
Genome assembly (visualization)
156
GRCh38
121
hg19
Lab
127
AMP-T2D consortium
75
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
Hi-C
organ_slims!
brain
large intestine
BIOSAMPLE
ASSAY
256 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
67
coronary artery
36
liver
20
retina
15
+ See 26 more…
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