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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
152
single cell RNA-seq
147
ATAC-seq
82
snATAC-seq
47
WGBS
41
ChIP-seq
17
pCHi-C
10
MeRIP-seq
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
147
DNA accessibility
Date released
64
August, 2021
57
May, 2022
11
February, 2023
11
May, 2023
4
March, 2019
Available data
106
bed narrowPeak
64
xls
bigWig
39
zippedFastqFolder
30
fastq
19
bam
3
bed bedgraph
3
txt
2
bed broadPeak
Organism
147
Homo sapiens
Biosample type
108
tissue
39
primary cell
Organ
75
kidney
72
pancreas
39
epithelium
Project
97
AMP
39
HPAP
11
T1D
Genome assembly (visualization)
77
GRCh38
20
hg19
Lab
AMP-T2D consortium
75
Katalin Susztak, Upenn
39
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
assay_title!
Hi-C
files.file_type!
bigWig
lab.title!
AMP-T2D consortium
month_released!
June, 2019
BIOSAMPLE
ASSAY
147 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
33
primary cell
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
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