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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
414
total RNA-seq
282
ChIP-seq
165
ATAC-seq
84
single cell RNA-seq
51
WGBS
27
DNase-seq
13
Hi-C
11
snATAC-seq
10
MeRIP-seq
8
RRBS
3
FAIRE-seq
2
Capture-C
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
1
pCHi-C
Assay category
165
DNA accessibility
Date released
57
May, 2022
23
February, 2023
20
November, 2019
16
May, 2021
14
September, 2018
7
August, 2020
5
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
4
October, 2019
3
August, 2017
3
September, 2020
Available data
77
bed narrowPeak
66
bam
56
fastq
41
bigWig
39
zippedFastqFolder
22
bigBed narrowPeak
2
bed broadPeak
2
tsv
Organism
165
Homo sapiens
Biosample type
74
tissue
72
primary cell
19
cell line
Organ
152
pancreas
103
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
skin of body
1
spleen
Project
105
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
84
hg19
60
GRCh38
Lab
82
AMP-T2D consortium
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
20
inconsistent ontology term
assay_title!
RNA microarray
organ_slims!
skin of body
BIOSAMPLE
ASSAY
165 results
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Clear Filters
ATAC-seq
tissue
islet of Langerhans
58
pigmented layer of retina
12
body of pancreas
4
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
Liver fetal (hepatocyte)
1
cell line
EndoC_BH1
19
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