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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
470
total RNA-seq
153
ChIP-seq
15
ATAC-seq
9
DNase-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
RRBS
Assay category
15
DNA accessibility
Date released
February, 2023
5
February, 2021
3
October, 2019
2
August, 2021
1
August, 2017
1
January, 2018
1
November, 2019
1
November, 2020
1
October, 2017
Available data
9
bigWig
7
bed narrowPeak
5
bam
4
bed bedgraph
4
bigBed narrowPeak
2
fastq
1
bed bed3
Organism
15
Homo sapiens
Biosample type
8
in vitro differentiated cells
5
tissue
2
primary cell
Organ
141
pancreas
91
epithelium
75
kidney
22
liver
15
connective tissue
12
heart
11
blood vessel
11
vasculature
10
artery
8
bone element
8
limb
8
skeleton
5
adipose tissue
3
brain
1
blood
1
bodily fluid
1
eye
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
15
AMP
Genome assembly (visualization)
15
hg19
5
GRCh38
Lab
13
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
RRBS
audit.ERROR.category!
inconsistent replicate
month_released!
February, 2023
BIOSAMPLE
ASSAY
15 results
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ATAC-seq
in vitro differentiated cells
adipocyte
7
osteoblast
1
tissue
adipose tissue
2
adipose tissue(adipose white tissue)
1
omental fat pad
1
subcutaneous adipose tissue
1
primary cell
osteoblast
2
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