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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
94
ChIP-seq
82
ATAC-seq
70
single cell RNA-seq
47
WGBS
8
Hi-C
6
MeRIP-seq
RRBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
82
DNA accessibility
Date released
39
May, 2022
16
May, 2021
12
February, 2023
7
August, 2020
3
September, 2020
2
March, 2020
2
October, 2019
1
November, 2019
Available data
39
zippedFastqFolder
36
bed narrowPeak
34
bigWig
32
fastq
24
bam
bigBed narrowPeak
1
tsv
Organism
82
Homo sapiens
Biosample type
50
primary cell
19
cell line
13
tissue
Organ
130
pancreas
81
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
22
liver
21
connective tissue
12
bone element
12
skeleton
8
limb
4
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
49
HPAP
33
AMP
Genome assembly (visualization)
16
hg19
12
GRCh38
Lab
49
Klaus Kaestner, Upenn
33
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
assay_title!
RRBS
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
82 results
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ATAC-seq
primary cell
pancreatic alpha cell
29
pancreatic beta cell
16
pancreatic acinar cell
4
Liver fetal (hepatocyte)
1
cell line
EndoC_BH1
19
tissue
pigmented layer of retina
12
islet of Langerhans
1
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