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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1170
ChIP-seq
231
total RNA-seq
209
DNase-seq
134
single cell RNA-seq
46
ATAC-seq
27
snATAC-seq
17
WGBS
5
FAIRE-seq
5
GRO-seq
RRBS
1
Hi-C
1
pCHi-C
Assay category
46
DNA accessibility
Date released
May, 2022
14
September, 2018
8
October, 2017
7
August, 2020
5
August, 2017
5
September, 2017
3
October, 2019
3
September, 2020
1
March, 2019
Available data
240
bed narrowPeak
157
bam
116
bigWig
64
xls
43
fastq
27
bigBed narrowPeak
14
tsv
12
bed bed3
7
bed bedgraph
4
bed bed3+
3
txt
2
bed broadPeak
Organism
46
Homo sapiens
Biosample type
32
primary cell
12
tissue
2
in vitro differentiated cells
Organ
38
pancreas
32
epithelium
5
connective tissue
3
adipose tissue
1
brain
1
liver
1
spleen
Project
36
AMP
10
HPAP
Genome assembly (visualization)
42
GRCh38
34
hg19
Lab
34
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
assay_title!
RRBS
month_released!
May, 2022
BIOSAMPLE
ASSAY
46 results
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ATAC-seq
primary cell
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
tissue
body of pancreas
4
islet of Langerhans
2
adipose tissue
1
cerebellum (Hemisphere)
1
omental fat pad
1
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in vitro differentiated cells
adipocyte
2
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