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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1254
ChIP-seq
1195
total RNA-seq
280
ATAC-seq
127
DNase-seq
89
single cell RNA-seq
87
RNA microarray
35
pCHi-C
28
snATAC-seq
21
Hi-C
20
WGBS
small RNA-seq
10
MeRIP-seq
9
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
280
DNA accessibility
Date released
76
August, 2021
55
February, 2023
38
May, 2022
26
November, 2019
21
May, 2021
19
October, 2019
13
February, 2021
11
May, 2023
7
October, 2017
4
March, 2019
4
March, 2020
3
January, 2018
2
August, 2017
1
July, 2019
Available data
192
bed narrowPeak
77
bam
64
xls
52
bigWig
28
fastq
10
bed bed3
7
bed bedgraph
5
bigBed narrowPeak
4
bed bed3+
3
txt
2
bed broadPeak
2
tsv
Organism
280
Homo sapiens
Biosample type
217
tissue
primary cell
42
in vitro differentiated cells
21
cell line
Organ
81
pancreas
75
kidney
heart
46
blood vessel
46
vasculature
45
artery
31
epithelium
28
eye
23
connective tissue
22
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
269
AMP
11
T1D
Genome assembly (visualization)
164
hg19
136
GRCh38
Lab
141
AMP-T2D consortium
75
Katalin Susztak, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
inconsistent ontology term
1
inconsistent replicate
assay_title!
small RNA-seq
biosample_type!
primary cell
organ_slims!
brain
heart
BIOSAMPLE
ASSAY
280 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
67
liver
20
retina
15
pigmented layer of retina
12
+ See 23 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
GM12878
1
HepG2
1
See all biosamples
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