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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
115
total RNA-seq
34
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
115
Transcription
34
DNA accessibility
Date released
64
May, 2021
45
May, 2020
24
May, 2022
19
February, 2023
Available data
120
bam
103
bigWig
96
tsv
24
fastq
18
bed narrowPeak
6
txt
2
bed bed3+
Organism
152
Homo sapiens
Biosample type
98
primary cell
41
tissue
10
in vitro differentiated cells
3
cell line
Organ
41
pancreas
Project
115
T1D
37
AMP
Genome assembly (visualization)
121
hg19
96
GRCh38
Lab
1584
AMP-T2D consortium
152
Kyle Gaulton, UCSD
141
Klaus Kaestner, Upenn
124
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
11
Bing Ren, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
files.file_type!
csv
BIOSAMPLE
ASSAY
152 results
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total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
primary cell
monocyte
53
CD8-positive, alpha-beta T cell
4
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 20 more…
tissue
islet of Langerhans
11
29
pancreas
1
in vitro differentiated cells
embryonic stem cell
5
5
cell line
EndoC_BH1
3
See all biosamples
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