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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
total RNA-seq
64
ChIP-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
64
DNA binding
29
DNA accessibility
Target of assay
24
transcription factor
22
histone
22
histone modification
18
control
11
broad histone mark
11
narrow histone mark
7
recombinant protein
2
RNA binding protein
Date released
23
August, 2021
23
October, 2019
17
February, 2021
17
May, 2021
14
November, 2019
3
March, 2020
1
January, 2018
Available data
475
bam
fastq
414
bigWig
402
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
1
bed bed3
1
tsv
Organism
98
Homo sapiens
Biosample type
918
tissue
353
primary cell
120
in vitro differentiated cells
98
cell line
Organ
47
pancreas
34
epithelium
21
liver
14
artery
14
blood vessel
14
heart
14
vasculature
12
kidney
1
blood
1
bodily fluid
Project
96
AMP
2
T1D
Genome assembly (visualization)
58
hg19
41
GRCh38
Lab
75
AMP-T2D consortium
23
Bing Ren, UCSD
Audit category:
45
inconsistent ontology term
1
inconsistent replicate
assay_title!
MPRA
files.file_type!
fastq
BIOSAMPLE
ASSAY
98 results
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ChIP-seq
ATAC-seq
STARR-seq
cell line
EndoC_BH1
15
19
HepG2
18
1
2
smooth muscle cell of the coronary artery
6
8
Panc1
13
RCC 7860 HIF1a re-expression
4
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