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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
73
DNA binding
6
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
51
August, 2017
23
October, 2018
1
February, 2023
1
January, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
40
bam
39
fastq
23
bigWig
11
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
4
bed bed3+
1
bed broadPeak
Organism
79
Homo sapiens
Biosample type
79
tissue
Organ
560
liver
367
pancreas
222
brain
210
epithelium
181
heart
148
vasculature
145
blood vessel
127
kidney
94
connective tissue
79
adipose tissue
79
artery
74
limb
61
blood
61
bodily fluid
40
musculature of body
36
nerve
33
eye
21
spleen
17
vein
12
bone element
12
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
Project
79
AMP
Genome assembly (visualization)
25
hg19
21
GRCh38
Lab
79
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
biosample_type!
in vitro differentiated cells
organ_slims!
pericardium
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
ATAC-seq
tissue
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
12
1
omental fat pad
11
1
white adipose tissue
12
adipose tissue
2
3
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