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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
66
ChIP-seq
12
ATAC-seq
Assay category
66
DNA binding
12
DNA accessibility
Target of assay
47
transcription factor
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
August, 2017
10
February, 2023
2
February, 2021
2
October, 2019
Available data
1567
bam
1466
bed narrowPeak
1350
bigWig
791
bigBed narrowPeak
732
fastq
313
tagAlign
77
bed broadPeak
66
bigBed broadPeak
64
xls
39
zippedFastqFolder
24
bed bed3+
14
tsv
12
bed bed3
7
bed bedgraph
3
tar
3
txt
1
tagAlign bed3+
Organism
78
Homo sapiens
Biosample type
59
cell line
9
primary cell
5
in vitro differentiated cells
5
tissue
Organ
59
liver
7
brain
6
connective tissue
6
epithelium
6
vasculature
4
blood vessel
4
bone element
4
skeleton
2
vein
Project
78
AMP
Genome assembly (visualization)
78
hg19
52
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
1
inconsistent replicate
Audit category:
13
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
ATAC-seq
cell line
HepG2
58
1
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
osteoblast
1
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
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