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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
23
DNA accessibility
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
50
May, 2020
49
August, 2017
49
November, 2018
22
August, 2021
20
May, 2022
6
October, 2019
1
February, 2021
Available data
513
bam
453
bigWig
453
fastq
436
bed narrowPeak
353
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
1
bed bed3
Organism
575
Homo sapiens
Biosample type
379
cell line
176
tissue
15
in vitro differentiated cells
5
primary cell
Organ
575
liver
359
pancreas
221
brain
220
epithelium
168
connective tissue
146
heart
127
kidney
113
vasculature
110
blood vessel
78
adipose tissue
74
limb
61
blood
61
bodily fluid
44
artery
40
musculature of body
36
nerve
22
embryo
21
spleen
17
vein
8
bone element
8
skeleton
6
eye
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
Project
575
AMP
Genome assembly (visualization)
452
hg19
363
GRCh38
Lab
537
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
February, 2023
BIOSAMPLE
ASSAY
575 results
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ChIP-seq
ATAC-seq
cell line
HepG2
378
1
tissue
liver
145
20
right lobe of liver
10
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
Liver fetal (hepatocyte)
1
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