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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
202
ChIP-seq
9
WGBS
6
RRBS
4
DNase-seq
2
ATAC-seq
Assay category
202
DNA binding
2
DNA accessibility
Target of assay
133
histone modification
132
histone
77
broad histone mark
54
narrow histone mark
40
transcription factor
29
control
6
RNA binding protein
3
chromatin remodeller
Date released
406
November, 2017
248
October, 2019
204
August, 2017
179
May, 2021
150
May, 2020
119
August, 2021
118
May, 2019
94
December, 2017
92
February, 2023
80
April, 2019
70
November, 2018
40
May, 2024
34
December, 2018
31
June, 2019
30
February, 2021
25
January, 2019
24
February, 2018
23
October, 2018
20
May, 2022
18
October, 2017
11
May, 2023
6
July, 2019
6
November, 2019
3
January, 2018
November, 2020
Available data
109
bam
109
fastq
108
bigWig
90
bed narrowPeak
69
tagAlign
27
bed broadPeak
22
bigBed narrowPeak
14
bed bed3+
13
bigBed broadPeak
Organism
204
Homo sapiens
Biosample type
122
tissue
67
in vitro differentiated cells
15
primary cell
Organ
118
connective tissue
pancreas
51
adipose tissue
49
liver
29
epithelium
22
musculature of body
Project
204
AMP
Genome assembly (visualization)
110
hg19
94
GRCh38
Lab
204
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2020
organ_slims!
pancreas
BIOSAMPLE
ASSAY
204 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
liver
48
subcutaneous abdominal adipose tissue
36
skeletal muscle tissue
22
white adipose tissue
12
adipose tissue
2
+ See 2 more…
in vitro differentiated cells
adipocyte
67
primary cell
skeletal muscle myoblast
15
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