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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
231
DNA accessibility
10
DNA methylation
Date released
100
May, 2020
39
May, 2022
24
June, 2019
14
September, 2018
13
May, 2021
12
February, 2023
9
July, 2019
7
August, 2020
6
August, 2017
6
October, 2019
5
September, 2017
3
September, 2020
2
November, 2020
1
February, 2021
Available data
113
bam
107
bigWig
68
bed narrowPeak
51
bigBed narrowPeak
39
zippedFastqFolder
34
fastq
28
bed broadPeak
28
bigBed broadPeak
27
bed bed3+
12
tsv
10
bed bedMethyl
10
bigBed bedMethyl
1
bed bed3
Organism
241
Homo sapiens
Biosample type
449
tissue
241
primary cell
43
in vitro differentiated cells
31
cell line
Organ
96
epithelium
71
pancreas
15
kidney
9
connective tissue
7
vasculature
6
brain
4
blood vessel
4
heart
4
liver
2
eye
2
musculature of body
2
vein
Project
192
AMP
49
HPAP
Genome assembly (visualization)
116
hg19
76
GRCh38
Lab
192
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
17
inconsistent ontology term
assay_title!
CRISPR RNA-seq
BIOSAMPLE
ASSAY
241 results
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ATAC-seq
DNase-seq
RRBS
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
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