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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
478
ChIP-seq
61
total RNA-seq
21
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
23
DNA accessibility
Date released
16
May, 2021
2
March, 2020
2
October, 2019
1
February, 2021
1
January, 2018
1
November, 2019
Available data
5
bigWig
4
bam
4
bed narrowPeak
2
bigBed narrowPeak
1
bed bed3
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
23
Homo sapiens
Biosample type
395
tissue
222
primary cell
43
in vitro differentiated cells
23
cell line
Organ
20
epithelium
20
pancreas
8
artery
8
blood vessel
8
heart
vasculature
1
blood
1
bodily fluid
1
kidney
1
liver
Project
23
AMP
Genome assembly (visualization)
7
hg19
4
GRCh38
Lab
23
AMP-T2D consortium
Audit category:
19
inconsistent ontology term
1
inconsistent replicate
month_released!
September, 2020
organ_slims!
vasculature
BIOSAMPLE
ASSAY
23 results
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ATAC-seq
DNase-seq
cell line
EndoC_BH1
19
GM12878
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
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