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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
941
total RNA-seq
867
ChIP-seq
178
DNase-seq
112
single cell RNA-seq
87
RNA microarray
63
ATAC-seq
27
WGBS
24
pCHi-C
16
small RNA-seq
13
Hi-C
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
snATAC-seq
Assay category
241
DNA accessibility
Date released
163
June, 2019
February, 2023
20
November, 2019
20
October, 2019
9
November, 2018
8
February, 2021
7
October, 2017
6
July, 2019
4
August, 2017
2
January, 2018
2
March, 2020
Available data
222
bam
220
bed narrowPeak
199
bigWig
180
bigBed narrowPeak
176
bed bed3+
176
bed broadPeak
176
bigBed broadPeak
19
fastq
1
tsv
Organism
241
Homo sapiens
Biosample type
241
tissue
170
primary cell
31
cell line
24
in vitro differentiated cells
Organ
68
kidney
44
limb
35
pancreas
33
musculature of body
31
heart
30
brain
18
ureter
8
blood vessel
8
bone element
8
skeleton
8
vasculature
7
adipose tissue
7
connective tissue
6
artery
5
liver
4
eye
3
nerve
2
spleen
1
pituitary gland
1
skin of body
Project
241
AMP
Genome assembly (visualization)
222
GRCh38
209
hg19
Lab
241
AMP-T2D consortium
75
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
month_released!
February, 2023
BIOSAMPLE
ASSAY
241 results
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DNase-seq
ATAC-seq
tissue
islet of Langerhans
1
34
heart
18
muscle of arm
17
brain
14
kidney
13
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