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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
897
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
169
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
21
WGBS
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
263
DNA accessibility
Date released
79
February, 2023
64
August, 2021
38
May, 2022
20
November, 2019
16
October, 2019
11
May, 2023
8
February, 2021
8
July, 2019
8
October, 2017
4
March, 2019
3
August, 2017
2
January, 2018
2
March, 2020
November, 2018
Available data
211
bed narrowPeak
67
bam
64
xls
46
bigWig
30
fastq
6
bigBed narrowPeak
5
bed bed3
2
bed broadPeak
1
tsv
Organism
263
Homo sapiens
Biosample type
263
tissue
201
primary cell
42
in vitro differentiated cells
29
cell line
Organ
76
kidney
63
pancreas
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
21
liver
12
bone element
12
epithelium
12
skeleton
8
limb
6
adipose tissue
6
connective tissue
5
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
252
AMP
11
T1D
Genome assembly (visualization)
158
GRCh38
125
hg19
Lab
134
AMP-T2D consortium
75
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
November, 2018
BIOSAMPLE
ASSAY
263 results
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ATAC-seq
FAIRE-seq
tissue
kidney
75
1
islet of Langerhans
68
1
coronary artery
36
liver
20
retina
15
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