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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
84
RNA microarray
59
ChIP-seq
40
ATAC-seq
9
pCHi-C
9
single cell RNA-seq
6
MeRIP-seq
5
Hi-C
2
Capture-C
2
RRBS
1
STARR-seq
Assay category
40
DNA accessibility
5
3D chromatin structure
Date released
16
May, 2021
8
November, 2019
7
February, 2023
6
October, 2019
4
March, 2020
4
May, 2020
Available data
15
bam
12
bed narrowPeak
7
bigWig
7
tsv
5
bedpe bed3+
5
hic
bed bed3+
1
bed bedgraph
1
txt
Organism
45
Homo sapiens
Biosample type
20
cell line
12
in vitro differentiated cells
12
primary cell
1
tissue
Organ
21
epithelium
20
pancreas
1
adipose tissue
1
connective tissue
1
liver
Project
45
AMP
Genome assembly (visualization)
23
hg19
11
GRCh38
Lab
44
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Audit category:
45
inconsistent ontology term
4
audit script error
1
inconsistent replicate
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
45 results
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ATAC-seq
Hi-C
cell line
EndoC_BH1
19
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cardiomyocytes (cardiac muscle cell)
1
2
cardiac precursors (cardiac muscle cell)
1
1
lymphocyte of B lineage (iPSC)
1
neuron cell of Hypothalamus (neuron)
1
primary cell
gabaergic neuron
3
microglial cell/astrocyte
3
central memory CD8-positive, alpha-beta T cell
2
naive B cel
2
Heart fetal (cardiac muscle cell)
1
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tissue
adipose tissue(adipose white tissue)
1
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