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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
92
ChIP-seq
31
DNase-seq
29
total RNA-seq
28
single cell RNA-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
129
DNA accessibility
6
3D chromatin structure
Date released
100
May, 2020
13
May, 2021
12
February, 2023
4
July, 2019
3
October, 2019
1
February, 2021
1
March, 2020
1
November, 2020
Available data
62
bam
50
bigWig
17
bed narrowPeak
12
tsv
4
bed bed3+
4
hdf5
2
hic
1
bed bed3
1
bedpe bed3+
Organism
135
Homo sapiens
Biosample type
135
primary cell
114
tissue
36
in vitro differentiated cells
11
cell line
Organ
27
epithelium
pancreas
4
blood vessel
4
vasculature
3
brain
3
connective tissue
2
liver
2
vein
Project
135
AMP
Genome assembly (visualization)
68
hg19
17
GRCh38
Lab
135
AMP-T2D consortium
1
ITG
Audit category:
12
inconsistent ontology term
1
audit script error
organ_slims!
pancreas
BIOSAMPLE
ASSAY
135 results
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ATAC-seq
Hi-C
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
gabaergic neuron
3
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