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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
115
total RNA-seq
34
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
52
DNA accessibility
Date released
18
May, 2022
16
January, 2021
15
February, 2023
5
May, 2021
Available data
18
bam
18
bed narrowPeak
18
fastq
5
bigWig
Organism
54
Homo sapiens
Biosample type
39
tissue
8
primary cell
5
in vitro differentiated cells
2
cell line
Organ
39
pancreas
8
blood
8
bodily fluid
Project
31
T1D
23
AMP
Genome assembly (visualization)
23
hg19
Lab
345
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
54
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
BIOSAMPLE
ASSAY
54 results
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ATAC-seq
snATAC-seq
HiChIP
tissue
islet of Langerhans
29
6
pancreas
4
primary cell
peripheral blood mononuclear cell
8
in vitro differentiated cells
embryonic stem cell
5
cell line
EndoC_BH1
2
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