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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1167
total RNA-seq
1105
ChIP-seq
292
ATAC-seq
182
single cell RNA-seq
179
DNase-seq
87
RNA microarray
30
pCHi-C
28
snATAC-seq
27
WGBS
20
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
Capture-C
Assay category
292
DNA accessibility
Target of assay
2
control
2
nucleotide modification
Date released
81
February, 2023
76
August, 2021
38
May, 2022
25
November, 2019
20
October, 2019
12
February, 2021
11
May, 2023
8
October, 2017
6
July, 2019
5
May, 2021
4
March, 2019
4
November, 2020
2
August, 2017
2
January, 2018
2
March, 2020
Available data
229
bed narrowPeak
81
bam
64
xls
55
bigWig
29
fastq
bed bed3
7
bed bedgraph
5
bigBed narrowPeak
4
bed bed3+
3
txt
2
bed broadPeak
1
tsv
Organism
296
Homo sapiens
Biosample type
259
tissue
199
primary cell
37
in vitro differentiated cells
34
cell line
Organ
75
kidney
66
pancreas
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
21
liver
18
connective tissue
12
epithelium
8
bone element
8
limb
8
skeleton
6
adipose tissue
3
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
285
AMP
11
T1D
Genome assembly (visualization)
175
GRCh38
154
hg19
Lab
153
AMP-T2D consortium
75
Katalin Susztak, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
11
inconsistent ontology term
assay_title!
Capture-C
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
296 results
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Clear Filters
ATAC-seq
MeRIP-seq
tissue
kidney
75
islet of Langerhans
68
4
coronary artery
36
liver
20
retina
15
+ See 24 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
immature adipocyte
2
+ See 6 more…
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