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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1011
total RNA-seq
907
ChIP-seq
240
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
240
DNA accessibility
Target of assay
2
control
2
nucleotide modification
Date released
79
February, 2023
64
August, 2021
20
November, 2019
18
May, 2022
16
October, 2019
11
May, 2023
8
February, 2021
8
October, 2017
6
July, 2019
4
March, 2019
4
November, 2020
2
August, 2017
2
January, 2018
2
March, 2020
Available data
188
bed narrowPeak
64
bam
64
xls
29
fastq
23
bigWig
5
bed bed3
3
bigBed narrowPeak
2
bed broadPeak
1
tsv
Organism
244
Homo sapiens
Biosample type
244
tissue
200
primary cell
42
in vitro differentiated cells
35
cell line
Organ
75
kidney
66
pancreas
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
12
bone element
12
epithelium
12
skeleton
8
limb
6
adipose tissue
6
connective tissue
4
brain
1
liver
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
233
AMP
11
T1D
Genome assembly (visualization)
158
GRCh38
102
hg19
Lab
131
AMP-T2D consortium
75
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
Karen Mohlke, UNC
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
lab.title!
Karen Mohlke, UNC
month_released!
August, 2022
BIOSAMPLE
ASSAY
244 results
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ATAC-seq
MeRIP-seq
tissue
kidney
75
islet of Langerhans
68
4
coronary artery
36
retina
15
pigmented layer of retina
12
+ See 28 more…
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