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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1783
ChIP-seq
1330
total RNA-seq
471
ATAC-seq
228
single cell RNA-seq
212
DNase-seq
87
RNA microarray
40
pCHi-C
30
Hi-C
28
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
8
snATAC-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
471
DNA accessibility
1
DNA sequencing
Date released
106
February, 2021
100
May, 2020
92
February, 2023
78
August, 2021
38
May, 2022
34
May, 2021
26
November, 2019
22
October, 2019
14
September, 2018
11
May, 2023
8
October, 2017
6
July, 2019
5
August, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
2
December, 2019
1
November, 2020
Available data
278
bed narrowPeak
175
bam
126
bigWig
87
txt
64
xls
51
fastq
27
bigBed narrowPeak
16
tsv
12
bed bed3
7
bed bedgraph
4
bed bed3+
2
bed broadPeak
1
vcf
Organism
558
Homo sapiens
Biosample type
336
tissue
151
primary cell
42
in vitro differentiated cells
30
cell line
Organ
96
bone element
92
pancreas
77
kidney
55
epithelium
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
26
connective tissue
24
liver
12
skeleton
8
limb
7
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
559
AMP
11
T1D
Genome assembly (visualization)
261
hg19
224
GRCh38
Lab
430
AMP-T2D consortium
75
Katalin Susztak, Upenn
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
126
inconsistent ontology term
2
audit script error
1
inconsistent replicate
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
559 results
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Clear Filters
ATAC-seq
RNA microarray
whole genome sequencing assay
tissue
bone element
84
kidney
75
islet of Langerhans
57
coronary artery
36
liver
20
+ See 32 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
pancreatic beta cell
7
+ See 34 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
HepG2
1
1
GM12878
1
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