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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
881
ChIP-seq
259
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
259
DNA accessibility
Date released
92
February, 2021
79
February, 2023
65
August, 2021
38
May, 2022
20
November, 2019
16
October, 2019
11
May, 2023
7
October, 2017
6
July, 2019
4
March, 2019
2
August, 2017
2
December, 2019
2
January, 2018
2
March, 2020
Available data
208
bed narrowPeak
84
txt
64
bam
64
xls
42
bigWig
28
fastq
5
bed bed3
3
bigBed narrowPeak
3
tsv
1
bed broadPeak
Organism
345
Homo sapiens
Biosample type
346
tissue
200
primary cell
42
in vitro differentiated cells
29
cell line
Organ
96
bone element
77
kidney
61
pancreas
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
21
liver
13
epithelium
12
skeleton
8
limb
7
adipose tissue
7
connective tissue
4
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
335
AMP
11
T1D
Genome assembly (visualization)
157
GRCh38
121
hg19
Lab
218
AMP-T2D consortium
75
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
Stephen Parker, UMich
Audit category:
85
inconsistent ontology term
2
audit script error
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
346 results
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ATAC-seq
RNA microarray
tissue
bone element
84
kidney
75
islet of Langerhans
67
coronary artery
36
liver
20
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