Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
969
total RNA-seq
907
ChIP-seq
178
DNase-seq
168
single cell RNA-seq
106
ATAC-seq
87
RNA microarray
27
WGBS
25
pCHi-C
20
snATAC-seq
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
106
DNA accessibility
11
DNA methylation
Date released
February, 2023
38
May, 2022
20
November, 2019
16
October, 2019
12
July, 2019
8
February, 2021
8
October, 2017
7
August, 2017
4
March, 2019
2
January, 2018
2
March, 2020
Available data
81
bed narrowPeak
64
bam
43
bigWig
32
fastq
9
bed bedMethyl
9
bigBed bedMethyl
3
bigBed narrowPeak
2
bed broadPeak
1
tsv
Organism
117
Homo sapiens
Biosample type
198
primary cell
117
tissue
30
in vitro differentiated cells
29
cell line
Organ
53
pancreas
22
liver
8
bone element
8
limb
8
skeleton
5
adipose tissue
5
connective tissue
5
heart
5
musculature of body
4
brain
3
blood vessel
3
vasculature
2
artery
1
eye
1
kidney
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
spleen
Project
117
AMP
Genome assembly (visualization)
98
hg19
48
GRCh38
Lab
Katalin Susztak, Upenn
74
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
month_released!
February, 2023
BIOSAMPLE
ASSAY
117 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
RRBS
tissue
islet of Langerhans
57
1
liver
20
1
skeletal muscle tissue
1
4
body of pancreas
4
heart left ventricle
2
1
+ See 25 more…
See all biosamples
Download