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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
23
DNA accessibility
5
DNA methylation
Date released
20
May, 2022
4
August, 2017
1
February, 2021
1
July, 2019
1
November, 2018
1
October, 2019
Available data
23
bed narrowPeak
22
bigWig
4
bam
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
bigBed narrowPeak
Organism
28
Homo sapiens
Biosample type
25
tissue
2
cell line
1
primary cell
Organ
203
pancreas
150
epithelium
75
kidney
55
heart
48
blood vessel
48
vasculature
45
artery
31
connective tissue
28
eye
28
liver
12
adipose tissue
12
bone element
12
skeleton
9
limb
4
brain
3
spleen
2
musculature of body
1
blood
1
bodily fluid
1
nerve
1
pituitary gland
1
skin of body
Project
28
AMP
Genome assembly (visualization)
23
hg19
4
GRCh38
Lab
20
Karen Mohlke, UNC
8
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
CRISPR genome editing followed by DNA sequencing
BIOSAMPLE
ASSAY
28 results
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ATAC-seq
WGBS
tissue
liver
20
3
right lobe of liver
1
1
cell line
HepG2
1
1
primary cell
Liver fetal (hepatocyte)
1
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