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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
278
ChIP-seq
153
ATAC-seq
80
single cell RNA-seq
51
WGBS
19
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
153
DNA accessibility
51
DNA methylation
Date released
98
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
11
February, 2023
7
August, 2020
6
February, 2021
5
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
4
November, 2018
3
August, 2017
3
October, 2019
3
September, 2020
1
January, 2018
Available data
80
zippedFastqFolder
69
bam
66
fastq
64
bed narrowPeak
46
bigWig
22
bigBed narrowPeak
8
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bed broadPeak
Organism
204
Homo sapiens
Biosample type
118
primary cell
66
tissue
20
cell line
Organ
203
pancreas
150
epithelium
75
kidney
55
heart
48
blood vessel
48
vasculature
45
artery
31
connective tissue
28
eye
28
liver
12
adipose tissue
12
bone element
12
skeleton
9
limb
4
brain
3
spleen
2
musculature of body
1
blood
1
bodily fluid
1
nerve
1
pituitary gland
1
skin of body
Project
97
AMP
96
HPAP
11
T1D
Genome assembly (visualization)
72
hg19
63
GRCh38
Lab
96
Klaus Kaestner, Upenn
74
AMP-T2D consortium
29
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
BIOSAMPLE
ASSAY
204 results
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Clear Filters
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
35
31
pancreatic beta cell
23
16
pancreatic acinar cell
9
pancreatic ductal cell
4
tissue
islet of Langerhans
58
body of pancreas
4
2
pancreas
2
cell line
EndoC_BH1
19
GM12878
1
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