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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
89
single cell RNA-seq
88
ChIP-seq
55
snATAC-seq
21
ATAC-seq
17
pCHi-C
6
WGBS
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
21
DNA accessibility
Date released
17
May, 2021
11
February, 2023
7
August, 2020
3
September, 2020
Available data
zippedFastqFolder
10
bigWig
10
fastq
Organism
38
Homo sapiens
Biosample type
26
primary cell
12
tissue
Organ
21
pancreas
10
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
28
T1D
10
HPAP
Genome assembly (visualization)
10
GRCh38
Lab
28
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
1
inconsistent ontology term
award.project!
AMP
files.file_type!
csv
zippedFastqFolder
BIOSAMPLE
ASSAY
38 results
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ATAC-seq
pCHi-C
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 12 more…
tissue
islet of Langerhans
11
thymus
1
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