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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
153
ChIP-seq
23
ATAC-seq
9
DNase-seq
6
WGBS
4
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
23
DNA accessibility
Date released
10
February, 2023
6
February, 2021
3
October, 2019
2
March, 2020
1
August, 2017
1
August, 2018
1
January, 2018
1
November, 2019
1
November, 2020
1
October, 2017
Available data
7
bigWig
6
bam
6
bed bed3
6
bed narrowPeak
5
bed bed3+
4
bed bedgraph
4
bigBed narrowPeak
3
fastq
2
tsv
1
bedpe bed3+
Organism
27
Homo sapiens
Biosample type
16
in vitro differentiated cells
7
tissue
3
primary cell
1
stem cell
Organ
70
pancreas
54
epithelium
50
heart
47
blood vessel
47
vasculature
45
artery
32
eye
27
connective tissue
12
bone element
12
skeleton
8
adipose tissue
8
limb
6
brain
6
liver
2
intestine
2
kidney
2
musculature of body
2
spleen
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
27
AMP
Genome assembly (visualization)
24
hg19
5
GRCh38
Lab
27
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
27 results
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ATAC-seq
pCHi-C
in vitro differentiated cells
adipocyte
7
chondrocyte
5
immature adipocyte
2
preadipocyte
1
white fat cell
1
tissue
adipose tissue
3
1
adipose tissue(adipose white tissue)
1
omental fat pad
1
subcutaneous adipose tissue
1
primary cell
osteoblast
2
1
stem cell
mesenchymal stem cell
1
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